200tqdan

Again more issues. Driving the car with no a/c and the drivers window down, then the window regulator breaks. Took the door apart and noticed several broken wires going to the locking mechanism. The door locks worked fine before with key or fob for locking and unlocking. Fixed the wires and replace window regulator. Now when you lock the door with key or fob only the drivers side front and rear hatch work. Also the vacuum pump under the seat runs for a while, then stops. I also noted that the pump seems to be running in reverse meaning that when you lock the drivers door it seems to be reversing the others up. But the main problem is none of the other locks work period. How could fixing the wires cause this to happen?
Any ideas?

Danny